Package | Description |
---|---|
g2d.graph |
This package contains the specialized graph members of the glyphish hierarchy.
|
g2d.graphviewer |
This package contains the first generation GUI for jlambda applications dealing with graphs, mainly in this case PLA.
|
g2d.netviewer |
This package contains the second generation GUI for jlambda applications dealing with graphs, mainly in this case CTA and NPA.
|
g2d.pla |
This package contains the Pathway Logic Assistant.
|
Modifier and Type | Class and Description |
---|---|
class |
IOPEdge
An edge object for
IOPGraph . |
class |
IOPNode
A node object for
IOPGraph . |
class |
IOPSubgraph
A subgraph object for
IOPGraph . |
Modifier and Type | Field and Description |
---|---|
static java.util.Comparator<GraphItem> |
GraphItem.COMPARATOR |
java.util.HashMap<java.lang.Integer,GraphItem> |
IOPGraph.graphItemsByGid |
protected java.util.Set<GraphItem> |
Highlighter.pathSet |
protected java.util.Set<GraphItem> |
Highlighter.supressSet |
Modifier and Type | Method and Description |
---|---|
GraphItem |
IOPGraph.getGraphItem(java.awt.geom.Point2D p,
double distance)
Find a graph item (node or edge) that
contains given point.
|
GraphItem |
IOPGraph.getGraphItemByGid(java.lang.Integer gid) |
GraphItem[] |
IOPGraph.getGraphItemsInArray() |
Modifier and Type | Method and Description |
---|---|
java.util.Collection<GraphItem> |
IOPGraph.getGraphItemsInCollection() |
Modifier and Type | Method and Description |
---|---|
void |
IOPGraph.fireChange(GraphItem item) |
Modifier and Type | Method and Description |
---|---|
IOPSubgraph |
IOPGraph.makeSubgraph(java.util.Collection<GraphItem> items) |
Constructor and Description |
---|
GraphItem(GraphItem clone) |
Modifier and Type | Field and Description |
---|---|
protected GraphItem |
GraphPanel.lastItem |
Modifier and Type | Method and Description |
---|---|
void |
GraphPanel.highlight(GraphItem item)
Select given graph item (node or edge) by highlighting it.
|
protected javax.swing.JButton |
GraphPanel.makeCenterOnButton(java.lang.String text,
int m_index,
GraphItem item) |
void |
GraphPanel.mouseClicked(java.awt.event.MouseEvent event,
GraphItem item,
java.awt.Point p) |
Modifier and Type | Method and Description |
---|---|
void |
NetGraphPanel.mouseClicked(java.awt.event.MouseEvent event,
GraphItem item,
java.awt.Point p) |
Modifier and Type | Method and Description |
---|---|
void |
TabFindGraphItem.setGraphItems(java.util.Collection<GraphItem> graphItems) |
void |
TabFindGraphItem.setGraphItems(java.util.List<GraphItem> graphItems) |
Modifier and Type | Method and Description |
---|---|
boolean |
SubgraphTabita.SubgraphMode.isSelected(IOPGraph graph,
GraphItem graphItem) |
void |
PLAGraphPanel.mouseClicked(java.awt.event.MouseEvent event,
GraphItem item,
java.awt.Point p) |
void |
SubgraphTabita.SubgraphMode.toggle(IOPGraph graph,
GraphItem graphItem,
boolean on,
boolean quiet) |
Modifier and Type | Method and Description |
---|---|
void |
SubgraphTabita.populate(java.util.List<IOPNode> occurrences,
java.util.List<IOPNode> rules,
java.util.Collection<GraphItem> subgraphs) |