Uses of Class
g2d.graph.IOPNode

Packages that use IOPNode

Package	Description
g2d.graph	This package contains the specialized graph members of the glyphish hierarchy.
g2d.graphviewer	This package contains the first generation GUI for jlambda applications dealing with graphs, mainly in this case PLA.
g2d.graphviewer.list
g2d.netviewer	This package contains the second generation GUI for jlambda applications dealing with graphs, mainly in this case CTA and NPA.
g2d.pla	This package contains the Pathway Logic Assistant.
g2d.pla.list

Uses of IOPNode in g2d.graph

Fields in g2d.graph declared as IOPNode

Modifier and Type	Field and Description
IOPNode	Seed.node
protected IOPNode[]	Highlighter.nodes
protected IOPNode	IOPEdge.sink
protected IOPNode	IOPEdge.source

Fields in g2d.graph with type parameters of type IOPNode

Modifier and Type	Field and Description
static java.util.Comparator<IOPNode>	IOPNode.COMPARATOR
java.util.HashMap<java.lang.Integer,IOPNode>	Seed.nodes
static java.util.Comparator<IOPNode>	IOPNode.OCC_COMPARATOR
protected Pair<IOPNode,IOPNode>	Highlighter.pair
protected Pair<IOPNode,IOPNode>	Highlighter.pair
static java.util.Comparator<IOPNode>	IOPNode.RULE_COMPARATOR

Methods in g2d.graph that return IOPNode

Modifier and Type	Method and Description
IOPNode	IOPGraph.getIOPNode(java.lang.String longname) Find node associated with given long name in this graph.
IOPNode	IOPGraph.getNode(java.awt.geom.Point2D p) Attempt to find a node located at a particular point.
IOPNode	IOPGraph.getNode(java.lang.String id) Obtain node with given ID in this graph.
IOPNode[]	IOPGraph.getNodesInArray() Returns the nodes in an array of IOPNodes.
IOPNode	IOPEdge.getSink() Obtain sink node of this edge.
IOPNode	IOPEdge.getSource() Obtain source node of this edge.
static IOPNode	IOPNode.makeOcc(java.lang.String nodeId, java.lang.String shortLabel, java.lang.String longLabel, DotNodeAttributes nattrs)
static IOPNode	IOPNode.makeOcc(java.lang.String nodeId, java.lang.String shortLabel, java.lang.String longLabel, java.lang.String shape, java.awt.Color color, java.awt.Color fillColor)
static IOPNode	IOPNode.makeOcc(java.lang.String nodeId, java.lang.String shortLabel, java.lang.String longLabel, java.lang.String shape, java.awt.Color color, java.awt.Color fillColor, int peripheries)
static IOPNode	IOPNode.makeRule(java.lang.String nodeId, java.lang.String shortLabel, java.lang.String longLabel, DotNodeAttributes nattrs)
static IOPNode	IOPNode.makeRule(java.lang.String nodeId, java.lang.String shortLabel, java.lang.String longLabel, java.lang.String shape, java.awt.Color color, java.awt.Color fillColor)
static IOPNode	IOPNode.makeRule(java.lang.String nodeId, java.lang.String shortLabel, java.lang.String longLabel, java.lang.String shape, java.awt.Color color, java.awt.Color fillColor, int peripheries)
static IOPNode	DotParserUtils.parseNodeAttributes(IOPGraph graph, IOPNode node, java.lang.String node_id, java.util.HashMap<java.lang.String,java.lang.String> attributes, double graphHeight)
static IOPNode	DotParserUtils.parseNodeAttributes(IOPGraph graph, IOPNode node, java.lang.String node_id, java.util.HashMap<java.lang.String,java.lang.String> attributes, double graphHeight, java.util.HashMap<java.lang.String,java.lang.String> global_attributes)

Methods in g2d.graph that return types with arguments of type IOPNode

Modifier and Type	Method and Description
java.util.List<IOPNode>	IOPSubgraph.getNodes(IOPGraph parent)
java.util.Collection<IOPNode>	IOPGraph.getNodesInCollection()
java.util.HashMap<IOPNode,java.util.Vector<IOPNode>>	IOPGraph.makeAdjacencyList() Creates a new adjacency list.
java.util.HashMap<IOPNode,java.util.Vector<IOPNode>>	IOPGraph.makeAdjacencyList() Creates a new adjacency list.

Methods in g2d.graph with parameters of type IOPNode

Modifier and Type	Method and Description
void	IOPSubgraph.addNode(IOPNode n)
void	IOPGraph.addNode(IOPNode n) Adds a node to the graph.
IOPGraph	IOPGraph.collapse(IOPSubgraph subgraph, IOPNode replacement) collapses the given subgraph to a single new given node.
static int	IOPNode.compareNodes(IOPNode n0, IOPNode n1)
int	IOPNode.compareTo(IOPNode in)
static int	IOPNode.compareToAsOcc(IOPNode n0, IOPNode n1)
static int	IOPNode.compareToAsRule(IOPNode n0, IOPNode n1)
void	IOPGraph.contract(IOPSubgraph subgraph, IOPNode replacement) contracts the given subgraph to a single new given node.
void	IOPGraph.expand(IOPNode contracted) Expands a contracted node in the graph.
IOPEdge	IOPGraph.getEdge(IOPNode source, IOPNode sink) Obtain edge between given source and sink nodes.
IOPSubgraph	IOPGraph.makeSubgraph(IOPNode[] nodes, IOPEdge[] edges, IOPSubgraph[] subgraphs)
IOPSubgraph	IOPGraph.makeSubgraph(java.lang.String name, IOPNode[] nodes, IOPEdge[] edges, IOPSubgraph[] subgraphs)
protected void	IOPNode.mimic(IOPNode doppel)
static IOPNode	DotParserUtils.parseNodeAttributes(IOPGraph graph, IOPNode node, java.lang.String node_id, java.util.HashMap<java.lang.String,java.lang.String> attributes, double graphHeight)
static IOPNode	DotParserUtils.parseNodeAttributes(IOPGraph graph, IOPNode node, java.lang.String node_id, java.util.HashMap<java.lang.String,java.lang.String> attributes, double graphHeight, java.util.HashMap<java.lang.String,java.lang.String> global_attributes)
void	IOPGraph.rmNode(IOPNode n) Removes a node the graph.
void	NodeDialog.setNode(IOPNode node)

Method parameters in g2d.graph with type arguments of type IOPNode

Modifier and Type	Method and Description
void	Highlighter.highlightPair(Pair<IOPNode,IOPNode> pair)
void	Highlighter.highlightPair(Pair<IOPNode,IOPNode> pair)
void	Highlighter.highlightPath(java.util.List<IOPNode> path)
static java.lang.String	Dot.makeDotInput(IOPGraph graph, java.util.Collection<IOPSubgraph> subgraphs, java.util.Collection<IOPNode> nodes, java.util.Map<java.lang.Integer,IOPEdge> edgeMap) Computes the dot description of a IOPGraph instance from its nodes and edges.
IOPSubgraph	IOPGraph.makeSubgraph(java.util.Collection<IOPNode> nodes, java.util.Collection<IOPEdge> edges, java.util.Collection<IOPSubgraph> subgraphs)
IOPSubgraph	IOPGraph.makeSubgraph(java.lang.String name, java.util.Collection<IOPNode> nodes, java.util.Collection<IOPEdge> edges, java.util.Collection<IOPSubgraph> subgraphs)
java.lang.String	IOPSubgraph.toDotString(IOPGraph graph, java.util.Collection<IOPNode> nodes, java.util.Map<java.lang.Integer,IOPEdge> edges)

Constructors in g2d.graph with parameters of type IOPNode

Constructor and Description
IOPEdge(IOPEdge clone, IOPNode newSource, IOPNode newSink) Constructs a new edge cloning the given edge with the new endpoints of given nodes.
IOPEdge(IOPNode source, IOPNode sink) Constructs a bare edge (no arrow heads) between two given nodes.
IOPEdge(IOPNode source, IOPNode sink, java.awt.Color c) Constructs a bare edge (no arrow heads) between two given nodes with the given color.
IOPNode(IOPNode clone) Construct a node cloning the given node.
NodeDialog(IOPFrame frame, IOPNode node)
Seed(IOPGraph graph, IOPSubgraph subgraph, IOPNode node, java.util.HashSet<java.lang.Integer> nodes, java.util.HashSet<java.lang.Integer> edges, java.util.HashSet<java.lang.Integer> subgraphs)

Uses of IOPNode in g2d.graphviewer

Methods in g2d.graphviewer with parameters of type IOPNode

Modifier and Type	Method and Description
protected void	GraphPanel.displayContextMNode(BaseFrame frame, IOPNode node)
protected void	GraphPanel.displayInfo(IOPNode node)
void	GraphPanel.displayMenu(IOPNode node) Display context menu for given node.
protected javax.swing.JButton	GraphPanel.makeDisplayButton(java.lang.String text, int m_index, IOPNode node)
void	SEPanel.setNodes(IOPNode[] nodes)

Method parameters in g2d.graphviewer with type arguments of type IOPNode

Modifier and Type	Method and Description
void	TabFind.setNodes(java.util.List<IOPNode> nodes)

Uses of IOPNode in g2d.graphviewer.list

Methods in g2d.graphviewer.list that return IOPNode

Modifier and Type	Method and Description
IOPNode	ListModel.getElementAt(int i)

Methods in g2d.graphviewer.list with parameters of type IOPNode

Modifier and Type	Method and Description
java.awt.Component	ListRenderer.getListCellRendererComponent(javax.swing.JList<? extends IOPNode> list, IOPNode value, int index, boolean isSelected, boolean cellHasFocus)

Method parameters in g2d.graphviewer.list with type arguments of type IOPNode

Modifier and Type	Method and Description
java.awt.Component	ListRenderer.getListCellRendererComponent(javax.swing.JList<? extends IOPNode> list, IOPNode value, int index, boolean isSelected, boolean cellHasFocus)
void	ListModel.setData(java.util.List<? extends IOPNode> list) Update data from given list.
void	ListModel.setData(java.util.List<? extends IOPNode> list, boolean sorted) Update data from given list.

Uses of IOPNode in g2d.netviewer

Methods in g2d.netviewer with parameters of type IOPNode

Modifier and Type	Method and Description
void	NetGraphPanel.displayInfo(IOPNode node)
protected javax.swing.JButton	NetGraphPanel.makeDisplayButton(java.lang.String text, int m_index, IOPNode node)

Method parameters in g2d.netviewer with type arguments of type IOPNode

Modifier and Type	Method and Description
void	TabFind.setNodes(java.util.Collection<IOPNode> nodes)
void	TabFind.setNodes(java.util.List<IOPNode> nodes)

Uses of IOPNode in g2d.pla

Methods in g2d.pla that return IOPNode

Modifier and Type	Method and Description
IOPNode	PLAGraphPanel.getOccurrence(IOPEdge edge) Get the node that corresponds to an occurrence from a given edge in this bipartite graph.
IOPNode	PLAGraphPanel.getRule(IOPEdge edge) Get the node that corresponds to a rule from a given edge in this bipartite graph.

Methods in g2d.pla with parameters of type IOPNode

Modifier and Type	Method and Description
protected void	PLAGraphPanel.displayContextMNode(PLAPanel plapanel, IOPNode node)
protected void	PLAGraphPanel.displayInfo(IOPNode node)
void	PLAGraphPanel.displayMenu(IOPNode node)
void	SubgraphTabita.expandNode(IOPNode node)
boolean	SettingsMode.isSelected(IOPNode node)
protected javax.swing.JButton	PLAGraphPanel.makeDisplayButton(java.lang.String text, int m_index, IOPNode node)
static SettingsGroup	SettingsMode.settingsList(PLAPanel owner, IOPNode node)
void	SettingsMode.toggle(IOPGraph graph, IOPNode node, boolean on, boolean quiet)

Method parameters in g2d.pla with type arguments of type IOPNode

Modifier and Type	Method and Description
void	SubgraphTabita.populate(java.util.List<IOPNode> occurrences, java.util.List<IOPNode> rules, java.util.Collection<GraphItem> subgraphs)
void	SubgraphTabita.populate(java.util.List<IOPNode> occurrences, java.util.List<IOPNode> rules, java.util.Collection<GraphItem> subgraphs)
void	SettingsTabita.setOccsAndRules(java.util.List<IOPNode> occurrences, java.util.List<IOPNode> rules)
void	SettingsTabita.setOccsAndRules(java.util.List<IOPNode> occurrences, java.util.List<IOPNode> rules)
void	SearchTabita.setRange(java.util.List<IOPNode> range) Set the searchSpace to be searched, consisting of IOPNode.

Uses of IOPNode in g2d.pla.list

Methods in g2d.pla.list that return IOPNode

Modifier and Type	Method and Description
IOPNode	NodeListModel.getElementAt(int i)

Methods in g2d.pla.list with parameters of type IOPNode

Modifier and Type	Method and Description
java.awt.Component	NodeListRenderer.getListCellRendererComponent(javax.swing.JList<? extends IOPNode> list, IOPNode value, int index, boolean isSelected, boolean cellHasFocus)

Method parameters in g2d.pla.list with type arguments of type IOPNode

Modifier and Type	Method and Description
java.awt.Component	NodeListRenderer.getListCellRendererComponent(javax.swing.JList<? extends IOPNode> list, IOPNode value, int index, boolean isSelected, boolean cellHasFocus)
void	NodeListModel.setData(java.util.List<? extends IOPNode> list) Update data from given list.
void	NodeListModel.setData(java.util.List<? extends IOPNode> list, boolean sorted) Update data from given list.